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java.lang.Objectorg.jmol.jvxl.readers.SurfaceReader
org.jmol.jvxl.readers.SurfaceFileReader
org.jmol.jvxl.readers.VolumeFileReader
org.jmol.jvxl.readers.MapFileReader
abstract class MapFileReader
Field Summary | |
---|---|
protected float |
a
|
protected javax.vecmath.Point3f |
adjustment
|
protected float |
alpha
|
protected float |
b
|
protected float |
beta
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protected float |
c
|
protected float |
dmax
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protected float |
dmean
|
protected float |
dmin
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protected float |
drange
|
protected float |
gamma
|
protected int |
mapc
|
protected int |
mapr
|
protected int |
maps
|
protected int |
mode
|
protected int |
na
|
protected int |
nb
|
protected int |
nc
|
protected int |
nx
|
protected int[] |
nxyzStart
|
protected int |
ny
|
protected int |
nz
|
protected javax.vecmath.Point3f |
origin
|
protected javax.vecmath.Point3f[] |
vectors
|
Fields inherited from class org.jmol.jvxl.readers.VolumeFileReader |
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atomCount, boundingBox, canDownsample, endOfData, isAngstroms, negativeAtomCount, nSurfaces, readerClosed, thePlane |
Fields inherited from class org.jmol.jvxl.readers.SurfaceFileReader |
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binarydoc, br, line, next, os |
Constructor Summary | |
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MapFileReader(SurfaceGenerator sg,
java.io.BufferedReader br)
|
Method Summary | |
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protected void |
getVectorsAndOrigin()
|
protected void |
setCutoffAutomatic()
|
Methods inherited from class org.jmol.jvxl.readers.VolumeFileReader |
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checkAtomLine, closeReader, getNextVoxelValue, getPlane, getValue, getVoxelBitSet, gotoData, nextVoxel, readParameters, readSurfaceData, readVolumeData, readVolumeParameters, readVoxelVector, recordData, skipComments, skipData |
Methods inherited from class org.jmol.jvxl.readers.SurfaceFileReader |
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discardTempData, getNextQuotedString, getTokens, parseFloat, parseFloat, parseFloatArray, parseFloatArray, parseInt, parseInt, parseIntNext, readLine, setOutputStream, skipTo |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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protected float dmin
protected float dmax
protected float dmean
protected float drange
protected int mapc
protected int mapr
protected int maps
protected int nx
protected int ny
protected int nz
protected int mode
protected int[] nxyzStart
protected int na
protected int nb
protected int nc
protected float a
protected float b
protected float c
protected float alpha
protected float beta
protected float gamma
protected javax.vecmath.Point3f origin
protected javax.vecmath.Point3f adjustment
protected javax.vecmath.Point3f[] vectors
Constructor Detail |
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MapFileReader(SurfaceGenerator sg, java.io.BufferedReader br)
Method Detail |
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protected void getVectorsAndOrigin()
protected void setCutoffAutomatic()
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