#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/FTPeakDetectController.h>
Public Types | |
typedef std::pair< double, boost::shared_ptr< RawData > > | Map |
typedef std::vector< Map > | Vec |
Private Attributes | |
LCMS * | lcms_ |
std::vector< LCMS > | lcmsRuns_ |
std::string | targetMzXML |
std::string | SOURCE_DIR |
std::string | OUTPUT_DIR |
FTPeakDetectController | ( | const FTPeakDetectController & | ) |
void add_raw_peak_to_LC_MS_run | ( | LCElutionPeak * | ) |
void addFakeMSMSToFeature | ( | SHFeature * | ) |
void addLCelutionProfile | ( | SHFeature * | , |
LCElutionPeak * | |||
) |
void addMS2FeatureToMS1Feature | ( | MS2Feature * | , |
SHFeature * | |||
) |
void associateMS2FeatureToMS1Feature | ( | MS2Feature * | ) |
bool checkIfFeatureExtractionExists | ( | std::string | ) |
void constructMS1FeatureFromMS2Feature | ( | MS2Feature * | ) |
void extract_MS2_elution_features | ( | ) |
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inline |
References FTPeakDetectController::targetMzXML.
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inline |
References FTPeakDetectController::lcms_.
FTPeakDetectController& operator< | ( | const FTPeakDetectController & | ) |
FTPeakDetectController& operator<= | ( | const FTPeakDetectController & | ) |
FTPeakDetectController& operator= | ( | const FTPeakDetectController & | ) |
FTPeakDetectController& operator> | ( | const FTPeakDetectController & | ) |
FTPeakDetectController& operator>= | ( | const FTPeakDetectController & | ) |
void parseMzXMLData | ( | ) |
void process_MS1_level_data_structure | ( | ProcessData * | ) |
void process_MS2_level_data_structure | ( | ProcessData * | ) |
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inline |
References FTPeakDetectController::targetMzXML.
void startScanParsing | ( | Vec | datavec | ) |
void write_out_parsed_LC_MS | ( | LCMS * | ) |
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private |
Referenced by FTPeakDetectController::getLCMS().
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private |
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private |
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private |
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private |
Referenced by FTPeakDetectController::get_target_file(), and FTPeakDetectController::set_target_file().
OpenMS / TOPP release 2.0.0 | Documentation generated on Thu Aug 20 2015 01:44:35 using doxygen 1.8.9.1 |