Home  · Classes  · Annotated Classes  · Modules  · Members  · Namespaces  · Related Pages
PILISModelGenerator.h
Go to the documentation of this file.
1 // --------------------------------------------------------------------------
2 // OpenMS -- Open-Source Mass Spectrometry
3 // --------------------------------------------------------------------------
4 // Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
5 // ETH Zurich, and Freie Universitaet Berlin 2002-2015.
6 //
7 // This software is released under a three-clause BSD license:
8 // * Redistributions of source code must retain the above copyright
9 // notice, this list of conditions and the following disclaimer.
10 // * Redistributions in binary form must reproduce the above copyright
11 // notice, this list of conditions and the following disclaimer in the
12 // documentation and/or other materials provided with the distribution.
13 // * Neither the name of any author or any participating institution
14 // may be used to endorse or promote products derived from this software
15 // without specific prior written permission.
16 // For a full list of authors, refer to the file AUTHORS.
17 // --------------------------------------------------------------------------
18 // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
19 // AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
20 // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
21 // ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
22 // INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
23 // EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
24 // PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
25 // OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
26 // WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
27 // OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
28 // ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
29 //
30 // --------------------------------------------------------------------------
31 // $Maintainer: Andreas Bertsch $
32 // $Authors: Andreas Bertsch $
33 // --------------------------------------------------------------------------
34 
35 #ifndef OPENMS_ANALYSIS_ID_PILISMODELGENERATOR_H
36 #define OPENMS_ANALYSIS_ID_PILISMODELGENERATOR_H
37 
39 
40 namespace OpenMS
41 {
42  class HiddenMarkovModel;
43 
53  class OPENMS_DLLAPI PILISModelGenerator :
54  public DefaultParamHandler
55  {
56 
57 public:
58 
64 
67 
69  virtual ~PILISModelGenerator();
71 
73  PILISModelGenerator & operator=(const PILISModelGenerator & mode);
74 
75 
79  void getModel(HiddenMarkovModel & model);
81 
83  //void getPrecursorModel(HiddenMarkovModel& model);
85 
86 
87 protected:
88 
90  //void initModels_();
91 
93  //void initMainModel_();
94 
96  //void initLossModels_();
97 
99  //void initPrecursorModel_();
100  };
101 }
102 #endif
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
This class implements the simulation of the spectra from PILIS.
Definition: PILISModelGenerator.h:53
Hidden Markov Model implementation of PILIS.
Definition: HiddenMarkovModel.h:134
A base class for all classes handling default parameters.
Definition: DefaultParamHandler.h:92

OpenMS / TOPP release 2.0.0 Documentation generated on Thu Aug 20 2015 01:44:27 using doxygen 1.8.9.1