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MRMDecoy Member List

This is the complete list of members for MRMDecoy, including all inherited members.

AASequenceIdentity(const String &sequence, const String &decoy)MRMDecoy
CMD enum valueProgressLogger
correctMasses(OpenMS::TargetedExperiment &exp, double mz_threshold, bool enable_losses)MRMDecoy
current_logger_ProgressLoggermutableprotected
endProgress() const ProgressLogger
find_all_tryptic(std::string sequence)MRMDecoy
generateDecoys(OpenMS::TargetedExperiment &exp, OpenMS::TargetedExperiment &dec, String method, String decoy_tag, double identity_threshold, int max_attempts, double mz_threshold, bool theoretical, double mz_shift, bool exclude_similar, double similarity_threshold, bool remove_CNterm_mods, double precursor_mass_shift, bool enable_losses, bool remove_unannotated)MRMDecoy
getDecoyIon(String ionid, boost::unordered_map< String, boost::unordered_map< String, double > > &decoy_ionseries)MRMDecoy
getIonSeries(AASequence sequence, int precursor_charge)MRMDecoy
getLogType() const ProgressLogger
getTargetIon(double ProductMZ, double mz_threshold, boost::unordered_map< String, boost::unordered_map< String, double > > target_ionseries, bool enable_losses)MRMDecoy
GUI enum valueProgressLogger
has_CNterminal_mods(const OpenMS::TargetedExperiment::Peptide &peptide)MRMDecoy
IonSeries typedefMRMDecoy
IonSeriesMapType typedefMRMDecoy
last_invoke_ProgressLoggermutableprotected
LogType enum nameProgressLogger
logTypeToFactoryName_(LogType type)ProgressLoggerprotectedstatic
MRMDecoy()MRMDecoyinline
NONE enum valueProgressLogger
operator=(const ProgressLogger &other)ProgressLogger
PeptideTransitionMapType typedefMRMDecoy
PeptideVectorType typedefMRMDecoy
ProgressLogger()ProgressLogger
ProgressLogger(const ProgressLogger &other)ProgressLogger
ProteinVectorType typedefMRMDecoy
pseudoreversePeptide(OpenMS::TargetedExperiment::Peptide peptide)MRMDecoy
recursion_depth_ProgressLoggerprotectedstatic
restrictTransitions(OpenMS::TargetedExperiment &exp, int min_transitions, int max_transitions)MRMDecoy
reversePeptide(OpenMS::TargetedExperiment::Peptide peptide)MRMDecoy
setLogType(LogType type) const ProgressLogger
setProgress(SignedSize value) const ProgressLogger
shufflePeptide(OpenMS::TargetedExperiment::Peptide peptide, double identity_threshold, int seed=-1, int max_attempts=10)MRMDecoy
startProgress(SignedSize begin, SignedSize end, const String &label) const ProgressLogger
TransitionVectorType typedefMRMDecoy
type_ProgressLoggermutableprotected
~ProgressLogger()ProgressLogger

OpenMS / TOPP release 2.0.0 Documentation generated on Thu Aug 20 2015 01:44:37 using doxygen 1.8.9.1