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IDMapper Member List

This is the complete list of members for IDMapper, including all inherited members.

annotate(MSExperiment< PeakType > &map, const std::vector< PeptideIdentification > &peptide_ids, const std::vector< ProteinIdentification > &protein_ids, const bool clear_ids=false, const bool mapMS1=false)IDMapperinline
annotate(MSExperiment< PeakType > &map, FeatureMap fmap, const bool clear_ids=false, const bool mapMS1=false)IDMapperinline
annotate(FeatureMap &map, const std::vector< PeptideIdentification > &ids, const std::vector< ProteinIdentification > &protein_ids, bool use_centroid_rt=false, bool use_centroid_mz=false)IDMapper
annotate(ConsensusMap &map, const std::vector< PeptideIdentification > &ids, const std::vector< ProteinIdentification > &protein_ids, bool measure_from_subelements=false, bool annotate_ids_with_subelements=false)IDMapper
check_defaults_DefaultParamHandlerprotected
checkHits_(const std::vector< PeptideIdentification > &ids) const IDMapperprotected
checkMassType_(const std::vector< DataProcessing > &processing) const IDMapperprotected
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
error_name_DefaultParamHandlerprotected
getAbsoluteMZTolerance_(const double mz) const IDMapperprotected
getDefaults() const DefaultParamHandler
getIDDetails_(const PeptideIdentification &id, double &rt_pep, DoubleList &mz_values, IntList &charges, bool use_avg_mass=false) const IDMapperprotected
getName() const DefaultParamHandler
getParameters() const DefaultParamHandler
getSubsections() const DefaultParamHandler
IDMapper()IDMapper
IDMapper(const IDMapper &cp)IDMapper
ignore_charge_IDMapperprotected
increaseBoundingBox_(DBoundingBox< 2 > &box)IDMapperprotected
isMatch_(const double rt_distance, const double mz_theoretical, const double mz_observed) const IDMapperprotected
Measure enum nameIDMapper
measure_IDMapperprotected
MEASURE_DA enum valueIDMapper
MEASURE_PPM enum valueIDMapper
mz_tolerance_IDMapperprotected
operator=(const IDMapper &rhs)IDMapper
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
operator==(const DefaultParamHandler &rhs) const DefaultParamHandlervirtual
param_DefaultParamHandlerprotected
rt_tolerance_IDMapperprotected
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
subsections_DefaultParamHandlerprotected
updateMembers_()IDMapperprotectedvirtual
warn_empty_defaults_DefaultParamHandlerprotected
~DefaultParamHandler()DefaultParamHandlervirtual

OpenMS / TOPP release 2.0.0 Documentation generated on Thu Aug 20 2015 01:44:35 using doxygen 1.8.9.1