Kernel datastructures. More...
Modules | |
ComparatorUtils | |
A collection of utilities for comparators. | |
RangeUtils | |
Predicates for range operations. | |
Classes | |
struct | BaseFeature::QualityLess |
Compare by quality. More... | |
class | BaseFeature |
A basic LC-MS feature. More... | |
struct | ChromatogramPeak::IntensityLess |
Comparator by intensity. More... | |
struct | ChromatogramPeak::RTLess |
Comparator by RT position. More... | |
struct | ChromatogramPeak::PositionLess |
Comparator by position. As this class has dimension 1, this is basically an alias for RTLess. More... | |
class | ChromatogramPeak |
A 1-dimensional raw data point or peak for chromatograms. More... | |
class | ChromatogramTools |
Conversion class to convert chromatograms. More... | |
struct | ConsensusFeature::SizeLess |
Compare by size(), the number of consensus elements. More... | |
struct | ConsensusFeature::MapsLess |
Compare by the sets of consensus elements (lexicographically) More... | |
struct | ConsensusFeature::Ratio |
slim struct to feed the need for systematically storing of ratios ( More... | |
class | ConsensusFeature |
A 2-dimensional consensus feature. More... | |
struct | ConsensusMap::FileDescription |
Source file description for input files. More... | |
class | ConsensusMap |
A container for consensus elements. More... | |
class | Feature |
An LC-MS feature. More... | |
struct | FeatureHandle::IndexLess |
Comparator by map and unique id. More... | |
class | FeatureHandle |
Representation of a Peak2D, RichPeak2D or Feature . More... | |
class | FeatureMap |
A container for features. More... | |
class | MassTrace |
A container type that gathers peaks similar in m/z and moving along retention time. More... | |
struct | MSChromatogram< PeakT >::MZLess |
Comparator for the retention time. More... | |
class | MSChromatogram< PeakT > |
The representation of a chromatogram. More... | |
struct | MSExperiment< PeakT, ChromatogramPeakT >::ContainerAdd_< ContainerIterator, addMassTraces > |
Helper class to add either general data points in set2DData or use mass traces from meta values. More... | |
struct | MSExperiment< PeakT, ChromatogramPeakT >::ContainerAdd_< ContainerIterator, false > |
struct | MSExperiment< PeakT, ChromatogramPeakT >::ContainerAdd_< ContainerIterator, true > |
class | MSExperiment< PeakT, ChromatogramPeakT > |
In-Memory representation of a mass spectrometry experiment. More... | |
struct | MSSpectrum< PeakT >::RTLess |
Comparator for the retention time. More... | |
class | MSSpectrum< PeakT > |
The representation of a 1D spectrum. More... | |
class | OnDiscMSExperiment< PeakT, ChromatogramPeakT > |
Representation of a mass spectrometry experiment on disk. More... | |
struct | Peak1D::IntensityLess |
struct | Peak1D::MZLess |
Comparator by m/z position. More... | |
struct | Peak1D::PositionLess |
Comparator by position. As this class has dimension 1, this is basically an alias for MZLess. More... | |
class | Peak1D |
A 1-dimensional raw data point or peak. More... | |
struct | Peak2D::IntensityLess |
struct | Peak2D::RTLess |
Comparator by RT position. More... | |
struct | Peak2D::MZLess |
Comparator by m/z position. More... | |
struct | Peak2D::PositionLess |
Comparator by position. Lexicographical comparison (first RT then m/z) is done. More... | |
class | Peak2D |
A 2-dimensional raw data point or peak. More... | |
class | RichPeak1D |
A 1-dimensional raw data point or peak with meta information. More... | |
class | RichPeak2D |
A 2-dimensional raw data point or peak with meta information. More... | |
Enumerations | |
enum | MT_QUANTMETHOD { MT_QUANT_AREA = 0, MT_QUANT_MEDIAN, SIZE_OF_MT_QUANTMETHOD } |
Type definitions | |
enum | AnnotationState { FEATURE_ID_NONE, FEATURE_ID_SINGLE, FEATURE_ID_MULTIPLE_SAME, FEATURE_ID_MULTIPLE_DIVERGENT, SIZE_OF_ANNOTATIONSTATE } |
state of identification, use getIDState() to query it More... | |
typedef float | QualityType |
Type of quality values. More... | |
typedef Int | ChargeType |
Type of charge values. More... | |
typedef float | WidthType |
Type of feature width/FWHM (RT) More... | |
static const std::string | NamesOfAnnotationState [SIZE_OF_ANNOTATIONSTATE] |
Type definitions | |
enum | { DIMENSION = 1 } |
Dimension. More... | |
typedef double | IntensityType |
Intensity type. More... | |
typedef DPosition< 1 > | PositionType |
Position type. More... | |
typedef double | CoordinateType |
Coordinate type. More... | |
Type definitions | |
enum | { DIMENSION = 1 } |
typedef float | IntensityType |
Intensity type. More... | |
typedef DPosition< 1 > | PositionType |
Position type. More... | |
typedef double | CoordinateType |
Coordinate type. More... | |
Dimension descriptions | |
enum | DimensionDescription { RT = 0, MZ = 1, DIMENSION = 2 } |
This enum maps the symbolic names of the dimensions to numbers. More... | |
static char const *const | dimension_name_short_ [DIMENSION] |
Short name of the dimension (abbreviated form) More... | |
static char const *const | dimension_name_full_ [DIMENSION] |
Full name of the dimension (self-explanatory form) More... | |
static char const *const | dimension_unit_short_ [DIMENSION] |
Unit of measurement (abbreviated form) More... | |
static char const *const | dimension_unit_full_ [DIMENSION] |
Unit of measurement (self-explanatory form) More... | |
static char const * | shortDimensionName (UInt const dim) |
Short name of the dimension (abbreviated form) More... | |
static char const * | shortDimensionNameRT () |
Short name of the dimension (abbreviated form) More... | |
static char const * | shortDimensionNameMZ () |
Short name of the dimension (abbreviated form) More... | |
static char const * | fullDimensionName (UInt const dim) |
Full name of the dimension (self-explanatory form) More... | |
static char const * | fullDimensionNameRT () |
Full name of the dimension (self-explanatory form) More... | |
static char const * | fullDimensionNameMZ () |
Full name of the dimension (self-explanatory form) More... | |
static char const * | shortDimensionUnit (UInt const dim) |
Unit of measurement (abbreviated form) More... | |
static char const * | shortDimensionUnitRT () |
Unit of measurement (abbreviated form) More... | |
static char const * | shortDimensionUnitMZ () |
Unit of measurement (abbreviated form) More... | |
static char const * | fullDimensionUnit (UInt const dim) |
Unit of measurement (self-explanatory form) More... | |
static char const * | fullDimensionUnitRT () |
Unit of measurement (self-explanatory form) More... | |
static char const * | fullDimensionUnitMZ () |
Unit of measurement (self-explanatory form) More... | |
typedef MSSpectrum< Peak1D > | PeakSpectrum |
Spectrum consisting of raw data points or peaks. More... | |
typedef MSExperiment< Peak1D > | PeakMap |
Two-dimensional map of raw data points or peaks. More... | |
typedef MSSpectrum< RichPeak1D > | RichPeakSpectrum |
Spectrum consisting of raw data points or peaks with meta information. More... | |
typedef MSExperiment< RichPeak1D > | RichPeakMap |
Two-dimensional map of raw data points or peaks with meta information. More... | |
typedef MSChromatogram< ChromatogramPeak > | Chromatogram |
Chromatogram consisting of raw data points or peaks. More... | |
Kernel datastructures.
typedef Int ChargeType |
Type of charge values.
typedef MSChromatogram<ChromatogramPeak> Chromatogram |
Chromatogram consisting of raw data points or peaks.
typedef double CoordinateType |
Coordinate type.
typedef double CoordinateType |
Coordinate type.
typedef float IntensityType |
Intensity type.
typedef double IntensityType |
Intensity type.
typedef MSExperiment<Peak1D> PeakMap |
Two-dimensional map of raw data points or peaks.
typedef MSSpectrum<Peak1D> PeakSpectrum |
Spectrum consisting of raw data points or peaks.
Meta information includes retention time and MS-level.
typedef DPosition<1> PositionType |
Position type.
typedef DPosition<1> PositionType |
Position type.
typedef float QualityType |
Type of quality values.
typedef MSExperiment<RichPeak1D> RichPeakMap |
Two-dimensional map of raw data points or peaks with meta information.
typedef MSSpectrum<RichPeak1D> RichPeakSpectrum |
Spectrum consisting of raw data points or peaks with meta information.
typedef float WidthType |
Type of feature width/FWHM (RT)
enum AnnotationState |
enum DimensionDescription |
|
static |
Full name of the dimension (self-explanatory form)
|
static |
Full name of the dimension (self-explanatory form)
|
static |
Full name of the dimension (self-explanatory form)
|
static |
Unit of measurement (self-explanatory form)
|
static |
Unit of measurement (self-explanatory form)
|
static |
Unit of measurement (self-explanatory form)
|
static |
Short name of the dimension (abbreviated form)
Referenced by ProductModel< 2 >::ProductModel(), ProductModel< 2 >::setModel(), and ProductModel< 2 >::updateMembers_().
|
static |
Short name of the dimension (abbreviated form)
|
static |
Short name of the dimension (abbreviated form)
|
static |
Unit of measurement (abbreviated form)
|
static |
Unit of measurement (abbreviated form)
|
static |
Unit of measurement (abbreviated form)
|
staticprotected |
Full name of the dimension (self-explanatory form)
|
staticprotected |
Short name of the dimension (abbreviated form)
|
staticprotected |
Unit of measurement (self-explanatory form)
|
staticprotected |
Unit of measurement (abbreviated form)
|
static |
OpenMS / TOPP release 2.0.0 | Documentation generated on Thu Aug 20 2015 01:44:32 using doxygen 1.8.9.1 |