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ChromatogramSettings.h
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34 
35 #ifndef OPENMS_METADATA_CHROMATOGRAMSETTINGS_H
36 #define OPENMS_METADATA_CHROMATOGRAMSETTINGS_H
37 
45 
46 #include <map>
47 #include <vector>
48 
49 namespace OpenMS
50 {
59  class OPENMS_DLLAPI ChromatogramSettings :
60  public MetaInfoInterface
61  {
62 
63 public:
64 
68  {
69  MASS_CHROMATOGRAM = 0,
78  SIZE_OF_CHROMATOGRAM_TYPE // last entry!
79  };
80 
82  static const char * const ChromatogramNames[SIZE_OF_CHROMATOGRAM_TYPE+1]; // avoid string[], since it gets copied onto heap on initialization
83 
89  virtual ~ChromatogramSettings();
90 
91  // Assignment operator
92  ChromatogramSettings & operator=(const ChromatogramSettings & source);
93 
95  bool operator==(const ChromatogramSettings & rhs) const;
97  bool operator!=(const ChromatogramSettings & rhs) const;
98 
99 
101  const String & getNativeID() const;
103  void setNativeID(const String & native_id);
104 
106  const String & getComment() const;
108  void setComment(const String & comment);
109 
111  const InstrumentSettings & getInstrumentSettings() const;
113  InstrumentSettings & getInstrumentSettings();
115  void setInstrumentSettings(const InstrumentSettings & instrument_settings);
116 
118  const AcquisitionInfo & getAcquisitionInfo() const;
120  AcquisitionInfo & getAcquisitionInfo();
122  void setAcquisitionInfo(const AcquisitionInfo & acquisition_info);
123 
125  const SourceFile & getSourceFile() const;
127  SourceFile & getSourceFile();
129  void setSourceFile(const SourceFile & source_file);
130 
132  const Precursor & getPrecursor() const;
134  Precursor & getPrecursor();
136  void setPrecursor(const Precursor & precursor);
137 
139  const Product & getProduct() const;
141  Product & getProduct();
143  void setProduct(const Product & product);
144 
146  const std::vector<DataProcessing> & getDataProcessing() const;
148  std::vector<DataProcessing> & getDataProcessing();
150  void setDataProcessing(const std::vector<DataProcessing> & data_processing);
151 
153  ChromatogramType getChromatogramType() const;
154 
156  void setChromatogramType(ChromatogramType type);
157 
158 
159 protected:
160 
168  std::vector<DataProcessing> data_processing_;
170  };
171 
173  OPENMS_DLLAPI std::ostream & operator<<(std::ostream & os, const ChromatogramSettings & spec);
174 
175 } // namespace OpenMS
176 
177 #endif // OPENMS_METADATA_CHROMATOGRAMSETTINGS_H
Definition: ChromatogramSettings.h:72
Description of the settings a MS Instrument was run with.
Definition: InstrumentSettings.h:48
A more convenient string class.
Definition: String.h:57
Precursor meta information.
Definition: Precursor.h:56
AcquisitionInfo acquisition_info_
Definition: ChromatogramSettings.h:165
Product meta information.
Definition: Product.h:49
SourceFile source_file_
Definition: ChromatogramSettings.h:164
Description of the combination of raw data to a single spectrum.
Definition: AcquisitionInfo.h:53
InstrumentSettings instrument_settings_
Definition: ChromatogramSettings.h:163
Product product_
Definition: ChromatogramSettings.h:167
Description of a file location, used to store the origin of (meta) data.
Definition: SourceFile.h:47
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
ChromatogramType
Definition: ChromatogramSettings.h:67
Definition: ChromatogramSettings.h:76
std::ostream & operator<<(std::ostream &os, const AccurateMassSearchResult &amsr)
Interface for classes that can store arbitrary meta information (Type-Name-Value tuples).
Definition: MetaInfoInterface.h:56
Representation of chromatogram settings, e.g. SRM/MRM chromatograms.
Definition: ChromatogramSettings.h:59
Definition: ChromatogramSettings.h:77
ChromatogramType type_
Definition: ChromatogramSettings.h:169
std::vector< DataProcessing > data_processing_
Definition: ChromatogramSettings.h:168
String native_id_
Definition: ChromatogramSettings.h:161
Precursor precursor_
Definition: ChromatogramSettings.h:166
String comment_
Definition: ChromatogramSettings.h:162

OpenMS / TOPP release 2.0.0 Documentation generated on Thu Aug 20 2015 01:44:21 using doxygen 1.8.9.1