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TOPPViewIdentificationViewBehavior.h
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34 
35 #ifndef OPENMS_VISUAL_TOPPVIEWIDENTIFICATIONVIEWBEHAVIOR_H
36 #define OPENMS_VISUAL_TOPPVIEWIDENTIFICATIONVIEWBEHAVIOR_H
37 
40 #include <vector>
42 
43 namespace OpenMS
44 {
45  class TOPPViewBase;
46 
52  {
53  Q_OBJECT
55 
56  //Feature map type
58  //Feature map managed type
60 
61  //Consensus feature map type
63  //Consensus map managed type
65 
66  //Peak map type
68  //Main managed data type (experiment)
73 
74 public:
77 
78 public slots:
80  virtual void showSpectrumAs1D(int index);
81 
83  virtual void activate1DSpectrum(int index);
84 
86  virtual void activate1DSpectrum(std::vector<int, std::allocator<int> > indices);
87 
89  virtual void deactivate1DSpectrum(int index);
90 
92  virtual void activateBehavior();
93 
95  virtual void deactivateBehavior();
96 
97  void setVisibleArea1D(double l, double h);
98 
99 private:
101  void addPrecursorLabels1D_(const std::vector<Precursor> & pcs);
102 
104  void removeTemporaryAnnotations_(Size spectrum_index);
105 
107  void addTheoreticalSpectrumLayer_(const PeptideHit & ph);
108 
111 
113  void addPeakAnnotations_(const std::vector<PeptideIdentification> & ph);
114 
115 private:
119  std::vector<Annotation1DItem *> temporary_annotations_;
120  };
121 }
122 
123 #endif // OPENMS_VISUAL_TOPPVIEWIDENTIFICATIONVIEWBEHAVIOR_H
void removeTheoreticalSpectrumLayer_()
removes all layer with theoretical spectrum generated in identification view
Behavior of TOPPView in identification mode.
Definition: TOPPViewIdentificationViewBehavior.h:50
LayerData::FeatureMapSharedPtrType FeatureMapSharedPtrType
Definition: TOPPViewIdentificationViewBehavior.h:59
Main window of TOPPView tool.
Definition: TOPPViewBase.h:106
A container for features.
Definition: FeatureMap.h:93
virtual void deactivate1DSpectrum(int index)
Behavior for deactivate1DSpectrum.
A container for consensus elements.
Definition: ConsensusMap.h:72
std::vector< Annotation1DItem * > temporary_annotations_
Definition: TOPPViewIdentificationViewBehavior.h:119
virtual void deactivateBehavior()
Slot for behavior deactivation.
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
virtual void activate1DSpectrum(int index)
Behavior for activate1DSpectrum.
void setVisibleArea1D(double l, double h)
TOPPViewIdentificationViewBehavior(TOPPViewBase *parent)
Construct the behaviour with its parent.
LayerData::ExperimentSharedPtrType ExperimentSharedPtrType
Definition: TOPPViewIdentificationViewBehavior.h:69
LayerData::FeatureMapType FeatureMapType
Definition: TOPPViewIdentificationViewBehavior.h:57
void addPeakAnnotations_(const std::vector< PeptideIdentification > &ph)
Adds annotation (compound name, adducts, ppm error) to a peak in 1D spectra.
boost::shared_ptr< ConsensusMap > ConsensusMapSharedPtrType
SharedPtr on consensus features.
Definition: LayerData.h:117
boost::shared_ptr< FeatureMap > FeatureMapSharedPtrType
SharedPtr on feature map.
Definition: LayerData.h:111
Representation of a peptide hit.
Definition: PeptideHit.h:55
virtual void showSpectrumAs1D(int index)
Behavior for showSpectrumAs1D.
const double h
boost::shared_ptr< ExperimentType > ExperimentSharedPtrType
SharedPtr on MSExperiment.
Definition: LayerData.h:123
void addTheoreticalSpectrumLayer_(const PeptideHit &ph)
Adds a theoretical spectrum as set from the preferences dialog for the peptide hit.
ExperimentType::SpectrumType SpectrumType
Peak spectrum type.
Definition: TOPPViewIdentificationViewBehavior.h:71
In-Memory representation of a mass spectrometry experiment.
Definition: MSExperiment.h:69
LayerData::ConsensusMapType ConsensusMapType
Definition: TOPPViewIdentificationViewBehavior.h:62
Interface class to model different behaviors of TOPPView.
Definition: TOPPViewBehaviorInterface.h:47
virtual void activateBehavior()
Slot for behavior activation.
LayerData::ConsensusMapSharedPtrType ConsensusMapSharedPtrType
Definition: TOPPViewIdentificationViewBehavior.h:64
TOPPViewBase * tv_
Definition: TOPPViewIdentificationViewBehavior.h:116
LayerData::ExperimentType ExperimentType
Definition: TOPPViewIdentificationViewBehavior.h:67
void addPrecursorLabels1D_(const std::vector< Precursor > &pcs)
Adds labels for the provided precursors to the 1D spectrum.
void removeTemporaryAnnotations_(Size spectrum_index)
Removes the precursor labels for from the specified 1D spectrum.

OpenMS / TOPP release 2.0.0 Documentation generated on Thu Aug 20 2015 01:44:30 using doxygen 1.8.9.1