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PILISIdentification Member List

This is the complete list of members for PILISIdentification, including all inherited members.

aa_weight_PILISIdentificationprotected
check_defaults_DefaultParamHandlerprotected
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
error_name_DefaultParamHandlerprotected
getDefaults() const DefaultParamHandler
getFinalIdentification_(PeptideIdentification &id, const RichPeakSpectrum &spec, const PeptideIdentification &pre_id)PILISIdentificationprotected
getIdentification(const std::map< String, UInt > &candidates, PeptideIdentification &id, const RichPeakSpectrum &spectrum)PILISIdentification
getIdentifications(const std::vector< std::map< String, UInt > > &candidates, std::vector< PeptideIdentification > &ids, const RichPeakMap &exp)PILISIdentification
getName() const DefaultParamHandler
getParameters() const DefaultParamHandler
getPILISModel_()PILISIdentificationprotected
getPreIdentification_(PeptideIdentification &id, const RichPeakSpectrum &spec, const std::map< String, UInt > &cand_peptides)PILISIdentificationprotected
getSpectrum_(RichPeakSpectrum &spec, const String &sequence, int charge)PILISIdentificationprotected
getSubsections() const DefaultParamHandler
hmm_model_PILISIdentificationprotected
operator=(const PILISIdentification &source)PILISIdentification
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
operator==(const DefaultParamHandler &rhs) const DefaultParamHandlervirtual
own_model_PILISIdentificationprotected
own_sequence_db_PILISIdentificationprotected
p_PILISIdentificationprotected
param_DefaultParamHandlerprotected
PILISIdentification()PILISIdentification
PILISIdentification(const PILISIdentification &source)PILISIdentification
pre_scorer_PILISIdentificationprotected
scorer_PILISIdentificationprotected
setModel(PILISModel *hmm_model)PILISIdentification
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
sim_specs_PILISIdentificationprotected
subsections_DefaultParamHandlerprotected
updateMembers_()PILISIdentificationprotectedvirtual
warn_empty_defaults_DefaultParamHandlerprotected
~DefaultParamHandler()DefaultParamHandlervirtual
~PILISIdentification()PILISIdentificationvirtual

OpenMS / TOPP release 2.0.0 Documentation generated on Thu Aug 20 2015 01:44:39 using doxygen 1.8.9.1