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Classes
Identification

Protein and peptide identification classes. More...

Classes

class  CompNovoIdentification
 run with CompNovoIdentification More...
 
class  CompNovoIdentificationBase::Permut
 Simple class to store permutations and a score. More...
 
class  CompNovoIdentificationBase
 run with CompNovoIdentificationBase More...
 
class  CompNovoIdentificationCID
 run with CompNovoIdentificationCID More...
 
struct  AccurateMassSearchEngine::MappingEntry_
 
struct  AccurateMassSearchEngine::CompareEntryAndMass_
 
class  AccurateMassSearchEngine
 An algorithm to search for exact mass matches from a spectrum against a database (e.g. HMDB). More...
 
class  ConsensusIDAlgorithm
 Abstract base class for all ConsensusID algorithms (that calculate a consensus from multiple ID runs). More...
 
class  ConsensusIDAlgorithmAverage
 Calculates a consensus from multiple ID runs by averaging the search scores. More...
 
class  ConsensusIDAlgorithmBest
 Calculates a consensus from multiple ID runs by taking the best search score. More...
 
class  ConsensusIDAlgorithmIdentity
 Abstract base class for ConsensusID algorithms that compare only identical sequences. More...
 
class  ConsensusIDAlgorithmPEPIons
 Calculates a consensus from multiple ID runs based on PEPs and shared ions. More...
 
class  ConsensusIDAlgorithmPEPMatrix
 Calculates a consensus from multiple ID runs based on PEPs and sequence similarities. More...
 
class  ConsensusIDAlgorithmRanks
 Calculates a consensus from multiple ID runs based on the ranks of the search hits. More...
 
class  ConsensusIDAlgorithmSimilarity
 Abstract base class for ConsensusID algorithms that take peptide similarity into account. More...
 
class  FalseDiscoveryRate
 Calculates an FDR from identifications. More...
 
struct  IDDecoyProbability::Transformation_
 struct to be used to store a transformation (used for fitting) More...
 
class  IDDecoyProbability
 IDDecoyProbability calculates probabilities using decoy approach. More...
 
class  IDRipper
 Ripping protein/peptide identification according their file origin. More...
 
class  PeptideProteinResolution
 Resolves shared peptides based on protein scores. More...
 
class  PILISIdentification
 This class actually implements a complete ProteinIdentification run with PILIS. More...
 
class  PILISModel
 This class implements the simulation of the spectra from PILIS. More...
 
class  PILISNeutralLossModel
 This class implements the simulation of the spectra from PILIS. More...
 
class  PILISScoring
 This class actually implements the E-value based scoring of PILIS. More...
 

Detailed Description

Protein and peptide identification classes.


OpenMS / TOPP release 2.0.0 Documentation generated on Thu Aug 20 2015 01:44:32 using doxygen 1.8.9.1