IDRipper splits the protein/peptide identification of an idXML file into several idXML files according their annotated file origin.
potential predecessor tools | ![]() ![]() | potential successor tools |
IDFilter | IDMapper |
Example
Assuming each peptide identification in a given idXML-file is annotated with its file origin (e.g. IDRipper_test.idXML) :
or <userParam type="string" name="file_origin" value="IDMerger1_test.idXML">
<userParam type="string" name="file_origin" value="IDMerger2_test.idXML">
Obviously the file contains protein/peptide identifications of IDMerger1_test.idXML and IDMerger2_test.idXML.
Calling IDRipper with an input file (here: -in
IDRipper_test.idXML) and an output directory (via out
or out_path
) will result in two idXML-files stored in the specified directory and named according their file origin.
In theory, merging files with IDMerger
and rip the resulting file with IDSplitter
will result in the original input files.
NOTE: The meta value file origin is removed by the IDSplitter
!!
The command line parameters of this tool are:
IDRipper -- Split protein/peptide identification file into several files according annotated file origin. Version: 2.0.0 Aug 19 2015, 22:19:33, Revision: GIT-NOTFOUND Usage: IDRipper <options> Options (mandatory options marked with '*'): -in <file>* Input file, in which the protein/peptide identifications must be tagged with 'file_origi n' (valid formats: 'idXML') -out <file> The path to this file is used as the output directory. (valid formats: 'idXML') -out_path <file> Directory for the output files after ripping according to 'file_origin'. If 'out_path' is set, 'out' is ignored. Common TOPP options: -ini <file> Use the given TOPP INI file -threads <n> Sets the number of threads allowed to be used by the TOPP tool (default: '1') -write_ini <file> Writes the default configuration file --help Shows options --helphelp Shows all options (including advanced)
INI file documentation of this tool:
OpenMS / TOPP release 2.0.0 | Documentation generated on Thu Aug 20 2015 01:44:31 using doxygen 1.8.9.1 |