Adds RT information to identifications in mzid.
pot. predecessor tools | ![]() ![]() | pot. successor tools |
XTandemAdapter | MascotAdapterOnline | |
IDFilter | QCCalculator |
RT is no mandatory attribute in a PSM representation of MzIdentML. Some identification engines do omit this information. Though, as the RT will be crucial for further analyses, all (e.g. ) reading MzIdentML will warn you about missing RT. This tool performs the annotation of the identification given the source file to the identification process.
RTAnnotator -- Annotates identification files that are missing the RT field Version: 2.0.0 Aug 19 2015, 22:19:33, Revision: GIT-NOTFOUND Usage: RTAnnotator <options> Options (mandatory options marked with '*'): -in_msref <file>* Mass spectra file as reference input for RT lookup (valid formats: 'mzML') -in <file>* Identifications without RT field (valid formats: 'mzid', 'idXML') -out <file>* Output file (identifications). (valid formats: 'mzid', 'idXML') Common UTIL options: -ini <file> Use the given TOPP INI file -threads <n> Sets the number of threads allowed to be used by the TOPP tool (default: '1') -write_ini <file> Writes the default configuration file --help Shows options --helphelp Shows all options (including advanced)INI file documentation of this tool:
OpenMS / TOPP release 2.0.0 | Documentation generated on Thu Aug 20 2015 01:44:32 using doxygen 1.8.9.1 |